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Institute


Access to PROTEUS specialized software for cage modelling

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Part of offer : Access to the aquaculture facility (AQUALABS) at HCMR-IMBBC

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E-Infrastructure Name: PROTEUS

Access to Micro-CT scans provided images, videos, metadata and online simulation

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Part of offer : Access to the Genomics and Biodiversity Facility (BIOGEN) at HCMR-IMBBC

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Description:

This service provides access to 3D Images, videos and metadata.

Access to MedOBIS vLab reliable and q

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Part of offer : Access to the Genomics and Biodiversity Facility (BIOGEN) at HCMR-IMBBC

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Description:

MedOBIS (the Mediterranean node of Ocean Biogeographic Information System) provides reliable and quality controlled marine species datasets, meta-data and satellite data from all over the Mediterranean Sea.

E-Infrastructure Name: MedOBIS

Access to Literature Mining (Extraction of species - traits associations)

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Part of offer : Access to the Genomics and Biodiversity Facility (BIOGEN) at HCMR-IMBBC

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Description:

Extraction of species - traits associations

Access to RvLab software

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Part of offer : Access to the Genomics and Biodiversity Facility (BIOGEN) at HCMR-IMBBC

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Description:

This service provides access to a statistical processing environment.

E-Infrastructure Name: R vLab

Access to the Genetics vLab Qiime

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Part of offer : Access to the Genomics and Biodiversity Facility (BIOGEN) at HCMR-IMBBC

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E-Infrastructure Name: Qiime

Access to 3D Image processing workstation for Micro-CT

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Part of offer : Access to the Genomics and Biodiversity Facility (BIOGEN) at HCMR-IMBBC

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Access to COMBER citizen science data

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Part of offer : Access to the Genomics and Biodiversity Facility (BIOGEN) at HCMR-IMBBC

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E-Infrastructure Name: COMBER

Access to CIGESMED citizen science data

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Part of offer : Access to the Genomics and Biodiversity Facility (BIOGEN) at HCMR-IMBBC

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E-Infrastructure Name: CIGESMED

Access to bioinformatic platform

Centre of Marine Sciences

Part of offer : Access to the laboratories and technology platforms at CCMAR

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Description:

CCMAR Computational Cluster Facility: GYRA - gyra.ualg.pt

E-Infrastructure Name: Gyra
e-Infra URL: #http://gyra.ualg.pt/#

Access to bioinformatics platform

Interdisciplinary Centre of Marine and Environmental Research

Part of offer : Access to the laboratories and technology platforms at CIIMAR

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Description:

Equipments: Analyses PC 48 cores, 48 CPUs + 32 GB RAM+(128 GB SSD + 2 TB HDD); Analyses PC 32 cores, 32 CPUs+32GB RAM + 2TB HDD; Workstation, Core i7 + 8 GB + 1TB HDD

EcoTaxa Database - OOV

Oceanographic Observatory of Villefranche sur mer

Part of offer : Technology platform Quantitative Imaging - OOV

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For more information contact institute liaison
Description:

Quantitative Imaging Platform. Access to planktonic taxonomy by using Flowcam, Zooscan and UVP5 instruments with Ecotaxa software. Possibility of remote access for analysing samples with Flowcam and Zooscan (http://www.embrc-france.fr/en/our-services/technology-platforms/imagery/quantitative-imaging).

Online data access and analysis services

Flanders Marine Institute

Part of offer : Online data access and analysis services

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Access to long-term monitoring data from LTER MC

Stazione Zoologica Anton Dohrn of Naples

Part of offer : Access to long-term monitoring data from LTER MC

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E-Infrastructure Name: LTER MC

Access to long-term monitoring sequencing data

Stazione Zoologica Anton Dohrn of Naples

Part of offer : Access to long-term monitoring sequencing data

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Access to oceanographic data through the RAIA observatory

Interdisciplinary Centre of Marine and Environmental Research

Part of offer : Access to oceanographic data through the RAIA observatory

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E-Infrastructure Name: RAIA
e-Infra URL: #http://www.marnaraia.org/#

Access to long-term monitoring data

Interuniversity Institute for Marine Sciences

Part of offer : Access to long-term monitoring data

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Access to long-term monitoring data

Institute for coastal marine environment Oristano

Part of offer : Access to long-term monitoring data

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Access to long-term monitoring data from LTER C1

National Institute of Oceanography and Experimental Geophysics

Part of offer : Access to long-term monitoring data from LTER C1

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E-Infrastructure Name: LTER C1

Access to long-term monitoring data from Sicily

Institute for coastal marine environment Capo Granitola

Part of offer : Access to long-term monitoring data from Sicily

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Description:

This service provides access to acoustic and CTD data.

Access to long-term monitoring data

Interuniversity Institute for Marine Sciences

Part of offer : Access to long-term monitoring data

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Access to long-term monitoring data

Institute for coastal marine environment Oristano

Part of offer : Access to long-term monitoring data

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Access to long-term monitoring data of the Rothera Time Series

British Antarctic Survey

Part of offer : Access to long-term monitoring data of the Rothera Time Series

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Description:

The Rothera Time Series (RaTS) is now one of the most important time series in the Southern Ocean, with the winter-time measurements being almost unique and of very high importance

E-Infrastructure Name: Rothera time series
e-Infra URL: #https://www.bas.ac.uk/project/rats/#

Access to monitoring data from AUVs and gliders

Scottish Association for Marine Science

Part of offer : Access to monitoring data from AUVs and gliders

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Description:

This service provides access to the data collected by the SAMS Seagliders.

E-Infrastructure Name: SAMS Seagliders
e-Infra URL: http://velocity.sams.ac.uk/gliders/

Access to long-term data of subtidal and intertidal artifical hard substrates

Royal Belgian Instute for Natural Sciences

Part of offer : Access to long-term data of subtidal and intertidal artifical hard substrates

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For more information contact institute liaison
E-Infrastructure Name: WinMon Database

Access to modelling software

Royal Belgian Instute for Natural Sciences

Part of offer : Access to modelling software

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Description:

Linking physical oceanography and biology

E-Infrastructure Name: COHERENS
e-Infra URL: #http://odnature.naturalsciences.be/coherens/#

Access to fish larval transport model (SOLEMOD)

Royal Belgian Instute for Natural Sciences

Part of offer : Access to fish larval transport model (SOLEMOD)

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Description:

This service provides access to SOLEMOD, a transport model for larval sole (dispersal, connectivity, individual based model).

E-Infrastructure Name: SOLEMOD
e-Infra URL: #http://odnature.naturalsciences.be/remsem/team#lacroix#

Access to jellyfish life cycle model (JELLYMOD)

Royal Belgian Instute for Natural Sciences

Part of offer : Access to jellyfish life cycle model (JELLYMOD)

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Description:

This service provides access to JELLYMOD, to model the biological life cycle and dispersal of jellyfish.

E-Infrastructure Name: JELLYMOD
e-Infra URL: #http://odnature.naturalsciences.be/jellymod/index#

High Performance Computing - SBR

Station biologique de Roscoff

Part of offer : High Performance Computing - SBR

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Description:

Access to 1600 CPU under SGE scheduler 800 To storage 32 up to 2000Go RAM and 10 Gb/s internet (http://abims.sb-roscoff.fr/resources/cluster).

Genomic VRE - SBR

Station biologique de Roscoff

Part of offer : Genomic VRE - SBR

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Description:

Access to "on demand" VRE dedidacted to managing, visualising, storing, and disseminating genetic and genomic data. GMOD/jBrowse/Apollo/Tripal (http://mmo.sb-roscoff.fr/jbrowse).

Workflow VRE - SBR

Station biologique de Roscoff

Part of offer : Workflow VRE - SBR

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Description:

Access to NGS QC, RNAseq with reference and denovo, sequenc similarity search, genome scaffolding, cellular localisation, metabarcode workflow environment (http:://galaxy3.sb-roscoff.fr; http://webtools.sb-roscoff.fr; http://galaxy4frogs.sb-roscoff.fr).

Statistical VRE - SBR

Station biologique de Roscoff

Part of offer : Statistical VRE - SBR

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Description:

Access to statistical processing environment (http://r.sb-roscoff.fr/).

Bio-analysis command line tools - SBR

Station biologique de Roscoff

Part of offer : Bio-analysis command line tools - SBR

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Description:

Access to several hundrerd of bioinformatics tools dedicated to sequence similarity search, genome/transcriptome assemblies, phylogeny, population genetics, metabarcoding, etc. (http://abims.sb-roscoff.fr/resources/cluster).

Genomic Databases - SBR

Station biologique de Roscoff

Part of offer : Genomic Databases - SBR

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Description:

Access to public "omics" databases mirroring weekly update (Genbank, Uniprot, Uniref, …) (http://abims.sb-roscoff.fr/resources/tools/databanks).

Marine picocyanobacteria comparative genomics resource - SBR

Station biologique de Roscoff

Part of offer : Marine picocyanobacteria comparative genomics resource - SBR

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For more information contact institute liaison
Description:

Access to a marine picocyanobacteria comparative genomics integrated database (http://abims.sb-roscoff.fr/cyanorak).

Sulfatases database - SBR

Station biologique de Roscoff

Part of offer : Sulfatases database - SBR

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For more information contact institute liaison
Description:

Access to a database dedicated to the sulfatase enzyme families and their classifications (http://abims.sb-roscoff.fr/sulfatlas).

Measurement platform data collection - SBR

Station biologique de Roscoff

Part of offer : Measurement platform data collection - SBR

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For more information contact institute liaison
Description:

Access to sensor data (atmospheric, physical, chemical) collected from various fixed or mobile measurement devices (http://abims.sb-roscoff.fr/hf).

English Channel bibliography database - SBR

Station biologique de Roscoff

Part of offer : English Channel bibliography database - SBR

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For more information contact institute liaison
Description:

Access to bibliographic information, including grey litterature, focused on the English Channel (http://www.channelis.eu/en)

Coastal pelagic ecosystem database - SBR

Station biologique de Roscoff

Part of offer : Coastal pelagic ecosystem database - SBR

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Description:

Access to a database with biodiversity datasets covering the coastal pelagic ecosystem (http://abims.sb-roscoff.fr/pelagos/).

Plankton database - SBR

Station biologique de Roscoff

Part of offer : Plankton database - SBR

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Description:

Access to a database dedicated to plancton symbiosis and radiolaria (http://abims.sb-roscoff.fr/renkan).

Observation database - SBR

Station biologique de Roscoff

Part of offer : Observation database - SBR

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Description:

Access to fauna and flora observations in the Roscoff coastal area (http://application.sb-roscoff.fr/inventaires/).

Expertise in bioinformatics - SBR

Station biologique de Roscoff

Part of offer : E-infrastructure, data and services - SBR

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Description:

Bio-informatics platform ABIMS offer 4 type of services : Software engineering: web appliance, software, database creation / Bioinformatics analysis: data analysis (RNA-seq, assembly, etc.), workflows / E-infrastructure: computing cluster, Galaxy, JBrowse, Apollo, R, storage space or bio-informatics tools / support request for the use of platform resources (software, data, etc.) (http://www.embrc-france.fr/en/our-services/technology-platforms/bioinformatique).

Data analysis tools and softwares - SBR

Station biologique de Roscoff

Part of offer : E-infrastructure, data and services - SBR

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For more information contact institute liaison
Description:

Bio-informatics platform ABIMS offer 4 type of services: Software engineering: web appliance, software, database creation / Bioinformatics analysis: data analysis (RNA-seq, assembly, etc.), workflows / E-infrastructure: computing cluster, Galaxy, JBrowse, Apollo, R, storage space or bio-informatics tools / support request for the use of platform resources (software, data, etc.) (http://www.embrc-france.fr/en/our-services/technology-platforms/bioinformatique).

Computing and storage infrastructure - SBR

Station biologique de Roscoff

Part of offer : E-infrastructure, data and services - SBR

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For more information contact institute liaison
Description:

Bio-informatics platform ABIMS propose 4 type of services: Software engineering: web appliance, software, database creation / Bioinformatics analysis: data analysis (RNA-seq, assembly, etc.), workflows / E-infrastructure: computing cluster, Galaxy, JBrowse, Apollo, R, storage space or bio-informatics tools / support request for the use of platform resources (software, data, etc.) (http://www.embrc-france.fr/en/our-services/technology-platforms/bioinformatique).

Access to the ACOI algae database

Coimbra Collection of Algae

Part of offer : Access to the ACOI algae database

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Description:

Strain information regarding field, taxonomic and other data.

Access to bioinformatics platform

Coimbra Collection of Algae

Part of offer : Access to bioinformatics platform

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Description:

ACOI computacional facilities.

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