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Access to PROTEUS specialized software for cage modelling

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Part of offer : Access to the aquaculture facility (AQUALABS) at HCMR-IMBBC

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E-Infrastructure Name: PROTEUS

Access to Literature Mining (Extraction of species - traits associations)

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Part of offer : Access to the Genomics and Biodiversity Facility (BIOGEN) at HCMR-IMBBC

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Description:

Extraction of species - traits associations

Access to RvLab software

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Part of offer : Access to the Genomics and Biodiversity Facility (BIOGEN) at HCMR-IMBBC

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Description:

This service provides access to a statistical processing environment.

E-Infrastructure Name: R vLab

Access to the Genetics vLab Qiime

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Part of offer : Access to the Genomics and Biodiversity Facility (BIOGEN) at HCMR-IMBBC

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E-Infrastructure Name: Qiime

Access to 3D Image processing workstation for Micro-CT

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Part of offer : Access to the Genomics and Biodiversity Facility (BIOGEN) at HCMR-IMBBC

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Access to modelling software

Royal Belgian Instute for Natural Sciences

Part of offer : Access to modelling software

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Description:

Linking physical oceanography and biology

E-Infrastructure Name: COHERENS
e-Infra URL: #http://odnature.naturalsciences.be/coherens/#

Access to fish larval transport model (SOLEMOD)

Royal Belgian Instute for Natural Sciences

Part of offer : Access to fish larval transport model (SOLEMOD)

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Description:

This service provides access to SOLEMOD, a transport model for larval sole (dispersal, connectivity, individual based model).

E-Infrastructure Name: SOLEMOD
e-Infra URL: #http://odnature.naturalsciences.be/remsem/team#lacroix#

Access to jellyfish life cycle model (JELLYMOD)

Royal Belgian Instute for Natural Sciences

Part of offer : Access to jellyfish life cycle model (JELLYMOD)

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Description:

This service provides access to JELLYMOD, to model the biological life cycle and dispersal of jellyfish.

E-Infrastructure Name: JELLYMOD
e-Infra URL: #http://odnature.naturalsciences.be/jellymod/index#

Genomic VRE - SBR

Station biologique de Roscoff

Part of offer : Genomic VRE - SBR

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Description:

Access to "on demand" VRE dedidacted to managing, visualising, storing, and disseminating genetic and genomic data. GMOD/jBrowse/Apollo/Tripal (http://mmo.sb-roscoff.fr/jbrowse).

Workflow VRE - SBR

Station biologique de Roscoff

Part of offer : Workflow VRE - SBR

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Description:

Access to NGS QC, RNAseq with reference and denovo, sequenc similarity search, genome scaffolding, cellular localisation, metabarcode workflow environment (http:://galaxy3.sb-roscoff.fr; http://webtools.sb-roscoff.fr; http://galaxy4frogs.sb-roscoff.fr).

Statistical VRE - SBR

Station biologique de Roscoff

Part of offer : Statistical VRE - SBR

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Description:

Access to statistical processing environment (http://r.sb-roscoff.fr/).

Data analysis tools and softwares - SBR

Station biologique de Roscoff

Part of offer : E-infrastructure, data and services - SBR

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Description:

Bio-informatics platform ABIMS offer 4 type of services: Software engineering: web appliance, software, database creation / Bioinformatics analysis: data analysis (RNA-seq, assembly, etc.), workflows / E-infrastructure: computing cluster, Galaxy, JBrowse, Apollo, R, storage space or bio-informatics tools / support request for the use of platform resources (software, data, etc.) (http://www.embrc-france.fr/en/our-services/technology-platforms/bioinformatique).

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