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Service List: Data analysis tools and software

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Access to Literature Mining (Extraction of species - traits associations)

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Access to RvLab software

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

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E-Infrastructure Name: R vLab

Access to the Genetics vLab Qiime

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

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E-Infrastructure Name: Qiime

Access to modelling software

Royal Belgian Instute for Natural Sciences

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E-Infrastructure Name: COHERENS
e-Infra URL: #http://odnature.naturalsciences.be/coherens/#

Access to PROTEUS specialized software for cage modelling

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

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E-Infrastructure Name: PROTEUS

Access to 3D Image processing workstation for Micro-CT

Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research

Access to microscopy imaging database analysis

Oceanographic Observatory of Villefranche sur mer

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E-Infrastructure Name: Omero
e-Infra URL: omero.obs-vlfr.fr/#http://omero.obs-vlfr.fr/#

Access to fish larval transport model (SOLEMOD)

Royal Belgian Instute for Natural Sciences

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E-Infrastructure Name: SOLEMOD
e-Infra URL: #http://odnature.naturalsciences.be/remsem/team#lacroix#

Access to jellyfish life cycle model (JELLYMOD)

Royal Belgian Instute for Natural Sciences

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E-Infrastructure Name: JELLYMOD
e-Infra URL: #http://odnature.naturalsciences.be/jellymod/index#

Access to genomic VRE

Station biologique de Roscoff

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Description: Access to "on demand" VRE dedicated to managing, visualizing, storing, and disseminating genetic and genomic data. GMOD/jBrowse/Apollo/Tripal.
e-Infra URL: http://mmo.sb-roscoff.fr/jbrowse

Access to workflow VRE

Station biologique de Roscoff

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Description: Access to NGS QC, RNAseq with reference and denovo, sequence similarity search, genome scaffolding, cellular localisation, metabarcode workflow environment.
e-Infra URL: http:://galaxy3.sb-roscoff.fr ; http://webtools.sb-roscoff.fr ; http://galaxy4frogs.sb-roscoff.fr

Access to statistical VRE

Station biologique de Roscoff

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Description: Access to statistical processing environment.
e-Infra URL: http://r.sb-roscoff.fr/

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