Trainings
Plankton Taxonomy From Quantitative Imaging Devices
19/01/2026
10:00
on_site
Information
Plankton Taxonomy From Quantitative Imaging Devices (using ECOTAXA)
Location
Institut de la Mer de Villefranche – IMEV, France
Date
19 to 23 January 2026
Instructors
Fabien Lombard (LOV, France), Hugo Zaccomer (LOV, France), Manoela Brandão (IMEV/LOV, France), Iole Di Capua (SZN-EMBRC, Italy), Karine Leblanc (MIO, France), Alexandra Kraberg (AWI, Germany)
Organisers
BIOcean5D
Using image data collected with the PlanktoScope, this hands-on course provides practical guidance on how to work efficiently with EcoTaxa, validate taxonomy, and build consistent, inter-calibrated taxonomic frameworks. Participants will learn how to organise, analyse, and validate their own datasets while strengthening their expertise in plankton taxonomy.
Registration Deadline: 7 December 2025
Register
Course Content
Working with EcoTaxa
- Organising and structuring datasets in EcoTaxa
- Managing multiple datasets
- Using AI-driven taxonomy tools to pre-sort images
- Validating AI-generated classifications
- Performing robust metadata and data-quality checks
- Using analytical pipelines for pre-analysis
Taxonomy & Imaging
- Principles of taxonomy for quantitative imaging
- Taxonomy of major plankton groups:
- Diatoms
- Dinoflagellates
- Tintinnids
- Rhizarians
- Metazoans (including copepods and appendicularia)
Collaborative Work
- Creating a shared EcoTaxa project
- Building a collective taxonomic reference guide (e.g. EcoTaxoGuide)
Prerequisites
This course is intended for:
- Researchers identifying marine plankton species
- Users of quantitative imaging instruments (PlanktoScope, FlowCam, IFCB, Cytosense, etc.)
- Master’s and PhD students seeking training in image-based plankton taxonomy
Expected background:
- Basic to intermediate experience identifying marine plankton (e.g., ability to recognise major groups/families)
- Experience or datasets from quantitative imaging systems (priority given to PlanktoScope users)
- Good working knowledge of English
- Bringing your own EcoTaxa project with PlanktoScope data is a plus
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