Trainings

Plankton Taxonomy From Quantitative Imaging Devices

19/01/2026
10:00
on_site
Information
Plankton Taxonomy From Quantitative Imaging Devices (using ECOTAXA)
Location
Institut de la Mer de Villefranche – IMEV, France
Date
19 to 23 January 2026
Instructors
Fabien Lombard (LOV, France), Hugo Zaccomer (LOV, France), Manoela Brandão (IMEV/LOV, France), Iole Di Capua (SZN-EMBRC, Italy), Karine Leblanc (MIO, France), Alexandra Kraberg (AWI, Germany)
Organisers
BIOcean5D

Using image data collected with the PlanktoScope, this hands-on course provides practical guidance on how to work efficiently with EcoTaxa, validate taxonomy, and build consistent, inter-calibrated taxonomic frameworks. Participants will learn how to organise, analyse, and validate their own datasets while strengthening their expertise in plankton taxonomy.

Registration Deadline: 7 December 2025

Register
Course Content

Working with EcoTaxa

  • Organising and structuring datasets in EcoTaxa
  • Managing multiple datasets
  • Using AI-driven taxonomy tools to pre-sort images
  • Validating AI-generated classifications
  • Performing robust metadata and data-quality checks
  • Using analytical pipelines for pre-analysis

Taxonomy & Imaging

  • Principles of taxonomy for quantitative imaging
  • Taxonomy of major plankton groups:
    • Diatoms
    • Dinoflagellates
    • Tintinnids
    • Rhizarians
    • Metazoans (including copepods and appendicularia)

Collaborative Work

  • Creating a shared EcoTaxa project
  • Building a collective taxonomic reference guide (e.g. EcoTaxoGuide)
Prerequisites

This course is intended for:

  • Researchers identifying marine plankton species
  • Users of quantitative imaging instruments (PlanktoScope, FlowCam, IFCB, Cytosense, etc.)
  • Master’s and PhD students seeking training in image-based plankton taxonomy

Expected background:

  • Basic to intermediate experience identifying marine plankton (e.g., ability to recognise major groups/families)
  • Experience or datasets from quantitative imaging systems (priority given to PlanktoScope users)
  • Good working knowledge of English
  • Bringing your own EcoTaxa project with PlanktoScope data is a plus
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